Yes, you will receive a separate payment for each site you have running Raptive ads.
If you have more than one site with Raptive, each site is set up with its own Raptive dashboard. If you choose to log in to both dashboards with the same email address, you can easily switch between each site's dashboard using a dropdown menu at the top of your dashboard.
You'll need to enter payment and tax information for each site individually, and you'll receive separate payments for each site.